WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y42G9A.6e.1 Sequence Name  Y42G9A.6e.1
Length (nt)  1968   Chromosome Location  III: 6142123-6149546
Chromosome . Primary Identifier  III Chromosome Location . Start  6142123
Chromosome Location . End  6149546 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y42G9A.6e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021535 wht-7 Y42G9A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y42G9A.6e Y42G9A.6e 1968   III: 6142123-6142301

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y42G9A.6e.1 6142123 6149546 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon91382   179   III: 6142123-6142301 Caenorhabditis elegans
Exon91387   439   III: 6142340-6142778 Caenorhabditis elegans
Exon91395   302   III: 6142828-6143129 Caenorhabditis elegans
Exon91403   257   III: 6143177-6143433 Caenorhabditis elegans
Exon91411   170   III: 6143807-6143976 Caenorhabditis elegans
Exon91419   96   III: 6144026-6144121 Caenorhabditis elegans
Exon91428   183   III: 6144169-6144351 Caenorhabditis elegans
Exon91445   128   III: 6149067-6149194 Caenorhabditis elegans
Exon91451   109   III: 6149238-6149346 Caenorhabditis elegans
Exon91459   57   III: 6149393-6149449 Caenorhabditis elegans
Exon91461   48   III: 6149499-6149546 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y42G9A.6e.1 6142123 6149546 -1

1 Sequence

Length
1968

1 Sequence Ontology Term

Identifier Name Description
transcript