WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R13A5.1d.1 Sequence Name  R13A5.1d.1
Length (nt)  2248   Chromosome Location  III: 7584683-7591575
Chromosome . Primary Identifier  III Chromosome Location . Start  7584683
Chromosome Location . End  7591575 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R13A5.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000846 cup-5 R13A5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13A5.1d R13A5.1d 1995   III: 7584689-7585141

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R13A5.1d.1 7584683 7591575 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon95478   459   III: 7584683-7585141 Caenorhabditis elegans
Exon95488   184   III: 7585191-7585374 Caenorhabditis elegans
Exon95494   312   III: 7585419-7585730 Caenorhabditis elegans
Exon95501   272   III: 7586109-7586380 Caenorhabditis elegans
Exon95507   108   III: 7586662-7586769 Caenorhabditis elegans
Exon95520   228   III: 7589429-7589656 Caenorhabditis elegans
Exon95526   102   III: 7589703-7589804 Caenorhabditis elegans
Exon95529   139   III: 7590537-7590675 Caenorhabditis elegans
Exon95536   91   III: 7590991-7591081 Caenorhabditis elegans
Exon95542   353   III: 7591223-7591575 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R13A5.1d.1 7584683 7591575 1

1 Sequence

Length
2248

1 Sequence Ontology Term

Identifier Name Description
transcript