WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54G8.2.1 Sequence Name  F54G8.2.1
Length (nt)  2566   Chromosome Location  III: 9163068-9168196
Chromosome . Primary Identifier  III Chromosome Location . Start  9163068
Chromosome Location . End  9168196 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54G8.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000960 dgk-3 F54G8.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54G8.2 F54G8.2 2388   III: 9163077-9163125

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54G8.2.1 9163068 9168196 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon99837   58   III: 9163068-9163125 Caenorhabditis elegans
Exon99838   83   III: 9163243-9163325 Caenorhabditis elegans
Exon99839   280   III: 9164527-9164806 Caenorhabditis elegans
Exon99840   117   III: 9165046-9165162 Caenorhabditis elegans
Exon99841   125   III: 9165208-9165332 Caenorhabditis elegans
Exon99842   120   III: 9165385-9165504 Caenorhabditis elegans
Exon99843   121   III: 9165717-9165837 Caenorhabditis elegans
Exon99844   81   III: 9165882-9165962 Caenorhabditis elegans
Exon99845   110   III: 9166008-9166117 Caenorhabditis elegans
Exon99846   675   III: 9166355-9167029 Caenorhabditis elegans
Exon99847   156   III: 9167119-9167274 Caenorhabditis elegans
Exon99848   207   III: 9167319-9167525 Caenorhabditis elegans
Exon99849   95   III: 9167568-9167662 Caenorhabditis elegans
Exon99850   101   III: 9167808-9167908 Caenorhabditis elegans
Exon99851   237   III: 9167960-9168196 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54G8.2.1 9163068 9168196 1

1 Sequence

Length
2566

1 Sequence Ontology Term

Identifier Name Description
transcript