WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y47D3A.6b Sequence Name  Y47D3A.6b
Length (nt)  867   Chromosome Location  III: 11182300-11182497
Chromosome . Primary Identifier  III Chromosome Location . Start  11182300
Chromosome Location . End  11182497
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3A.6b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE52664 TRA-1, isoform b 30.9 288 Caenorhabditis elegans
 

Other

15 RNAi

WormBase ID
WBRNAi00095789
WBRNAi00009343
WBRNAi00056762
WBRNAi00026721
WBRNAi00077788
WBRNAi00037165
WBRNAi00071366
WBRNAi00107577
WBRNAi00065768
WBRNAi00107159
WBRNAi00107108
WBRNAi00107453
WBRNAi00107435
WBRNAi00107605
WBRNAi00107502

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y47D3A.6b 11182300 11182497 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006604 tra-1 Y47D3A.6 Caenorhabditis elegans

8 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y47D3A.6b 11182300 11182497 -1
CDS:Y47D3A.6b 11182978 11183086 -1
CDS:Y47D3A.6b 11183148 11183191 -1
CDS:Y47D3A.6b 11183714 11183934 -1
CDS:Y47D3A.6b 11191815 11191931 -1
CDS:Y47D3A.6b 11193042 11193102 -1
CDS:Y47D3A.6b 11194865 11194960 -1
CDS:Y47D3A.6b 11195043 11195063 -1

1 Sequence

Length
867

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y47D3A.6b.1 Y47D3A.6b.1 1289   III: 11182016-11195201