WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y111B2A.11 Sequence Name  Y111B2A.11
Length (nt)  2388   Chromosome Location  III: 12600474-12600540
Chromosome . Primary Identifier  III Chromosome Location . Start  12600474
Chromosome Location . End  12600540
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.11

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE36670 EPC-1 89.6 795 Caenorhabditis elegans
 

Other

60 RNAi

WormBase ID
WBRNAi00078607
WBRNAi00055336
WBRNAi00055338
WBRNAi00026587
WBRNAi00027506
WBRNAi00063005
WBRNAi00063003
WBRNAi00022469
WBRNAi00006911
WBRNAi00062992
WBRNAi00062993
WBRNAi00071378
WBRNAi00078591
WBRNAi00036569
WBRNAi00002135
WBRNAi00062999
WBRNAi00081608
WBRNAi00063004
WBRNAi00107028
WBRNAi00107040
WBRNAi00055337
WBRNAi00070002
WBRNAi00106839
WBRNAi00117686
WBRNAi00117685
WBRNAi00117688
WBRNAi00117687
WBRNAi00117689
WBRNAi00117690
WBRNAi00117692

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y111B2A.11 12600474 12600540 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007030 epc-1 Y111B2A.11 Caenorhabditis elegans

9 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y111B2A.11 12600474 12600540 -1
CDS:Y111B2A.11 12600890 12601119 -1
CDS:Y111B2A.11 12602216 12602604 -1
CDS:Y111B2A.11 12602673 12602878 -1
CDS:Y111B2A.11 12604321 12605180 -1
CDS:Y111B2A.11 12605811 12605938 -1
CDS:Y111B2A.11 12605998 12606177 -1
CDS:Y111B2A.11 12607055 12607223 -1
CDS:Y111B2A.11 12608200 12608358 -1

1 Sequence

Length
2388

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y111B2A.11.1 Y111B2A.11.1 3341   III: 12599630-12608467
Transcript:Y111B2A.11.2 Y111B2A.11.2 2720   III: 12600370-12608586