WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y39E4A.2a Sequence Name  Y39E4A.2a
Length (nt)  1176   Chromosome Location  III: 12953205-12953353
Chromosome . Primary Identifier  III Chromosome Location . Start  12953205
Chromosome Location . End  12953353
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39E4A.2a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE16616 TTM-1, isoform a 42.4 391 Caenorhabditis elegans
 

Other

10 RNAi

WormBase ID
WBRNAi00108001
WBRNAi00056232
WBRNAi00020402
WBRNAi00076781
WBRNAi00006440
WBRNAi00036940
WBRNAi00070127
WBRNAi00095110
WBRNAi00108006
WBRNAi00114328

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y39E4A.2a 12953205 12953353 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012712 ttm-1 Y39E4A.2 Caenorhabditis elegans

4 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y39E4A.2a 12953205 12953353 -1
CDS:Y39E4A.2a 12954541 12955333 -1
CDS:Y39E4A.2a 12965174 12965343 -1
CDS:Y39E4A.2a 12966929 12966992 -1

1 Sequence

Length
1176

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y39E4A.2a.1 Y39E4A.2a.1 1414   III: 12952970-12966995