WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3C.3g.1 Sequence Name  Y55F3C.3g.1
Length (nt)  1903   Chromosome Location  IV: 748707-753295
Chromosome . Primary Identifier  IV Chromosome Location . Start  748707
Chromosome Location . End  753295 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3C.3g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021948 kvs-5 Y55F3C.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3C.3g Y55F3C.3g 1536   IV: 748707-748738

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3C.3g.1 748707 753295 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112182   32   IV: 748707-748738 Caenorhabditis elegans
Exon112188   102   IV: 748813-748914 Caenorhabditis elegans
Exon112194   170   IV: 748969-749138 Caenorhabditis elegans
Exon112200   94   IV: 749514-749607 Caenorhabditis elegans
Exon112206   181   IV: 749791-749971 Caenorhabditis elegans
Exon112215   93   IV: 750200-750292 Caenorhabditis elegans
Exon112221   201   IV: 751088-751288 Caenorhabditis elegans
Exon112231   102   IV: 751583-751684 Caenorhabditis elegans
Exon112237   193   IV: 751872-752064 Caenorhabditis elegans
Exon112243   163   IV: 752115-752277 Caenorhabditis elegans
Exon112249   127   IV: 752679-752805 Caenorhabditis elegans
Exon112254   445   IV: 752851-753295 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3C.3g.1 748707 753295 1

1 Sequence

Length
1903

1 Sequence Ontology Term

Identifier Name Description
transcript