WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y73B6BL.18a Sequence Name  Y73B6BL.18a
Length (nt)  3429   Chromosome Location  IV: 6365405-6365453
Chromosome . Primary Identifier  IV Chromosome Location . Start  6365405
Chromosome Location . End  6365453
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y73B6BL.18a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE29923 SMG-3, isoform a 131.5 1142 Caenorhabditis elegans
 

Other

1 RNAi

WormBase ID
WBRNAi00058316

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y73B6BL.18a 6365405 6365453 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004881 smg-3 Y73B6BL.18 Caenorhabditis elegans

14 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y73B6BL.18a 6365405 6365453 -1
CDS:Y73B6BL.18a 6365505 6365850 -1
CDS:Y73B6BL.18a 6368130 6368208 -1
CDS:Y73B6BL.18a 6368573 6368714 -1
CDS:Y73B6BL.18a 6369013 6369113 -1
CDS:Y73B6BL.18a 6369172 6369313 -1
CDS:Y73B6BL.18a 6369787 6370161 -1
CDS:Y73B6BL.18a 6370595 6370941 -1
CDS:Y73B6BL.18a 6370993 6371865 -1
CDS:Y73B6BL.18a 6371910 6372002 -1
CDS:Y73B6BL.18a 6372055 6372284 -1
CDS:Y73B6BL.18a 6372334 6372545 -1
CDS:Y73B6BL.18a 6372601 6372779 -1
CDS:Y73B6BL.18a 6372827 6373087 -1

1 Sequence

Length
3429

1 Sequence Ontology Term

Identifier Name Description
CDS  

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y73B6BL.18a.1 Y73B6BL.18a.1 3706   IV: 6362395-6373087
Transcript:Y73B6BL.18a.3 Y73B6BL.18a.3 3720   IV: 6362406-6373093
Transcript:Y73B6BL.18a.2 Y73B6BL.18a.2 3703   IV: 6362419-6373087
Transcript:Y73B6BL.18a.4 Y73B6BL.18a.4 6410   IV: 6362430-6373093