WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y73B6A.5c.1 Sequence Name  Y73B6A.5c.1
Length (nt)  3245   Chromosome Location  IV: 6742538-6748572
Chromosome . Primary Identifier  IV Chromosome Location . Start  6742538
Chromosome Location . End  6748572 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y73B6A.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003030 lin-45 Y73B6A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y73B6A.5c Y73B6A.5c 2397   IV: 6743238-6743465

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y73B6A.5c.1 6742538 6748572 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon127814   928   IV: 6742538-6743465 Caenorhabditis elegans
Exon127821   412   IV: 6743987-6744398 Caenorhabditis elegans
Exon127827   97   IV: 6744448-6744544 Caenorhabditis elegans
Exon127833   259   IV: 6744591-6744849 Caenorhabditis elegans
Exon127839   123   IV: 6745067-6745189 Caenorhabditis elegans
Exon127845   215   IV: 6745235-6745449 Caenorhabditis elegans
Exon127851   124   IV: 6745623-6745746 Caenorhabditis elegans
Exon127857   300   IV: 6745797-6746096 Caenorhabditis elegans
Exon127863   261   IV: 6746456-6746716 Caenorhabditis elegans
Exon127869   123   IV: 6746769-6746891 Caenorhabditis elegans
Exon127876   183   IV: 6746943-6747125 Caenorhabditis elegans
Exon127885   220   IV: 6748353-6748572 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y73B6A.5c.1 6742538 6748572 -1

1 Sequence

Length
3245

1 Sequence Ontology Term

Identifier Name Description
transcript