WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F08B4.2a Sequence Name  F08B4.2a
Length (nt)  4350   Chromosome Location  IV: 8669142-8669216
Chromosome . Primary Identifier  IV Chromosome Location . Start  8669142
Chromosome Location . End  8669216
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F08B4.2a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE52236 CDH-5, isoform a 158.5 1449 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00000523
WBRNAi00043966
WBRNAi00012865

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F08B4.2a 8669142 8669216 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000397 cdh-5 F08B4.2 Caenorhabditis elegans

22 Locations


Feature . Primary Identifier
Start End Strand
CDS:F08B4.2a 8669142 8669216 1
CDS:F08B4.2a 8669334 8669480 1
CDS:F08B4.2a 8669564 8669782 1
CDS:F08B4.2a 8669835 8670105 1
CDS:F08B4.2a 8670223 8670379 1
CDS:F08B4.2a 8670438 8670740 1
CDS:F08B4.2a 8670786 8670969 1
CDS:F08B4.2a 8671042 8671263 1
CDS:F08B4.2a 8671575 8672003 1
CDS:F08B4.2a 8672298 8672487 1
CDS:F08B4.2a 8672540 8672676 1
CDS:F08B4.2a 8672722 8672901 1
CDS:F08B4.2a 8672973 8673104 1
CDS:F08B4.2a 8673153 8673313 1
CDS:F08B4.2a 8673603 8673800 1
CDS:F08B4.2a 8673851 8674034 1
CDS:F08B4.2a 8674084 8674248 1
CDS:F08B4.2a 8674332 8674562 1
CDS:F08B4.2a 8674654 8674806 1
CDS:F08B4.2a 8675044 8675519 1
CDS:F08B4.2a 8675575 8675631 1
CDS:F08B4.2a 8676170 8676248 1

1 Sequence

Length
4350

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F08B4.2a.1 F08B4.2a.1 4920   IV: 8668935-8676611