WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T05E11.4a Sequence Name  T05E11.4a
Length (nt)  1278   Chromosome Location  IV: 11123159-11123567
Chromosome . Primary Identifier  IV Chromosome Location . Start  11123159
Chromosome Location . End  11123567
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05E11.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE06363 SPO-11, isoform a 49.2 425 Caenorhabditis elegans
 

Other

23 RNAi

WormBase ID
WBRNAi00052512
WBRNAi00072284
WBRNAi00008070
WBRNAi00018231
WBRNAi00098241
WBRNAi00098243
WBRNAi00098242
WBRNAi00098253
WBRNAi00098255
WBRNAi00098254
WBRNAi00098239
WBRNAi00098238
WBRNAi00098240
WBRNAi00035204
WBRNAi00074688
WBRNAi00072285
WBRNAi00072286
WBRNAi00074687
WBRNAi00074689
WBRNAi00074691
WBRNAi00074690
WBRNAi00074693
WBRNAi00074692

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T05E11.4a 11123159 11123567 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004985 spo-11 T05E11.4 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:T05E11.4a 11123159 11123567 -1
CDS:T05E11.4a 11123614 11123704 -1
CDS:T05E11.4a 11123772 11123999 -1
CDS:T05E11.4a 11124047 11124143 -1
CDS:T05E11.4a 11124188 11124422 -1
CDS:T05E11.4a 11124473 11124642 -1
CDS:T05E11.4a 11124688 11124735 -1

1 Sequence

Length
1278

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T05E11.4a.1 T05E11.4a.1 1431   IV: 11123133-11124862