WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y116A8C.16a.1 Sequence Name  Y116A8C.16a.1
Length (nt)  3979   Chromosome Location  IV: 16995822-17014953
Chromosome . Primary Identifier  IV Chromosome Location . Start  16995822
Chromosome Location . End  17014953 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y116A8C.16a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004403 rom-4 Y116A8C.16 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y116A8C.16a Y116A8C.16a 3612   IV: 16995822-16995863

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y116A8C.16a.1 16995822 17014953 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon166590   42   IV: 16995822-16995863 Caenorhabditis elegans
Exon166591   65   IV: 16995912-16995976 Caenorhabditis elegans
Exon166593   84   IV: 16996028-16996111 Caenorhabditis elegans
Exon166595   56   IV: 16996188-16996243 Caenorhabditis elegans
Exon166597   242   IV: 16996703-16996944 Caenorhabditis elegans
Exon166599   101   IV: 16998743-16998843 Caenorhabditis elegans
Exon166601   344   IV: 16999491-16999834 Caenorhabditis elegans
Exon166604   383   IV: 17002700-17003082 Caenorhabditis elegans
Exon166606   378   IV: 17004743-17005120 Caenorhabditis elegans
Exon166610   597   IV: 17008629-17009225 Caenorhabditis elegans
Exon166614   746   IV: 17010273-17011018 Caenorhabditis elegans
Exon166618   140   IV: 17012586-17012725 Caenorhabditis elegans
Exon166622   263   IV: 17012892-17013154 Caenorhabditis elegans
Exon166632   538   IV: 17014416-17014953 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y116A8C.16a.1 16995822 17014953 1

1 Sequence

Length
3979

1 Sequence Ontology Term

Identifier Name Description
transcript