WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08G5.5a.1 Sequence Name  T08G5.5a.1
Length (nt)  3059   Chromosome Location  V: 14034329-14038372
Chromosome . Primary Identifier  V Chromosome Location . Start  14034329
Chromosome Location . End  14038372 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08G5.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011625 vps-39 T08G5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08G5.5a T08G5.5a 2772   V: 14034593-14034805

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08G5.5a.1 14034329 14038372 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon206152   477   V: 14034329-14034805 Caenorhabditis elegans
Exon206154   584   V: 14035405-14035988 Caenorhabditis elegans
Exon206158   532   V: 14036045-14036576 Caenorhabditis elegans
Exon206164   290   V: 14036622-14036911 Caenorhabditis elegans
Exon206166   369   V: 14036956-14037324 Caenorhabditis elegans
Exon206170   293   V: 14037377-14037669 Caenorhabditis elegans
Exon206174   143   V: 14037714-14037856 Caenorhabditis elegans
Exon206178   209   V: 14037905-14038113 Caenorhabditis elegans
Exon206182   66   V: 14038164-14038229 Caenorhabditis elegans
Exon206186   96   V: 14038277-14038372 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08G5.5a.1 14034329 14038372 -1

1 Sequence

Length
3059

1 Sequence Ontology Term

Identifier Name Description
transcript