WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T08G5.5a Sequence Name  T08G5.5a
Length (nt)  2772   Chromosome Location  V: 14034593-14034805
Chromosome . Primary Identifier  V Chromosome Location . Start  14034593
Chromosome Location . End  14034805
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08G5.5a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE18946 VPS-39, isoform a 104.9 923 Caenorhabditis elegans
 

Other

26 RNAi

WormBase ID
WBRNAi00052902
WBRNAi00018469
WBRNAi00097833
WBRNAi00097845
WBRNAi00097851
WBRNAi00090915
WBRNAi00076663
WBRNAi00097838
WBRNAi00097842
WBRNAi00097854
WBRNAi00061393
WBRNAi00087625
WBRNAi00035363
WBRNAi00078176
WBRNAi00007624
WBRNAi00091960
WBRNAi00087605
WBRNAi00087607
WBRNAi00087641
WBRNAi00091959
WBRNAi00078007
WBRNAi00097823
WBRNAi00080478
WBRNAi00099137
WBRNAi00114425
WBRNAi00114431

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T08G5.5a 14034593 14034805 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011625 vps-39 T08G5.5 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:T08G5.5a 14034593 14034805 -1
CDS:T08G5.5a 14035405 14035988 -1
CDS:T08G5.5a 14036045 14036576 -1
CDS:T08G5.5a 14036622 14036911 -1
CDS:T08G5.5a 14036956 14037324 -1
CDS:T08G5.5a 14037377 14037669 -1
CDS:T08G5.5a 14037714 14037856 -1
CDS:T08G5.5a 14037905 14038113 -1
CDS:T08G5.5a 14038164 14038229 -1
CDS:T08G5.5a 14038277 14038349 -1

1 Sequence

Length
2772

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T08G5.5a.1 T08G5.5a.1 3059   V: 14034329-14038372