WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48G7.3i.1 Sequence Name  C48G7.3i.1
Length (nt)  4107   Chromosome Location  V: 14784641-14804809
Chromosome . Primary Identifier  V Chromosome Location . Start  14784641
Chromosome Location . End  14804809 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48G7.3i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008183 rin-1 C48G7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48G7.3i C48G7.3i 4107   V: 14784641-14784794

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C48G7.3i.1 14784641 14804809 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon208127   154   V: 14784641-14784794 Caenorhabditis elegans
Exon208135   469   V: 14785180-14785648 Caenorhabditis elegans
Exon208144   1122   V: 14786002-14787123 Caenorhabditis elegans
Exon208153   120   V: 14787178-14787297 Caenorhabditis elegans
Exon208162   169   V: 14787600-14787768 Caenorhabditis elegans
Exon208170   190   V: 14789510-14789699 Caenorhabditis elegans
Exon208178   549   V: 14795926-14796474 Caenorhabditis elegans
Exon208187   82   V: 14797522-14797603 Caenorhabditis elegans
Exon208192   174   V: 14798223-14798396 Caenorhabditis elegans
Exon208198   97   V: 14798971-14799067 Caenorhabditis elegans
Exon208202   172   V: 14799235-14799406 Caenorhabditis elegans
Exon208206   85   V: 14800805-14800889 Caenorhabditis elegans
Exon208210   120   V: 14801778-14801897 Caenorhabditis elegans
Exon208214   54   V: 14802124-14802177 Caenorhabditis elegans
Exon208218   181   V: 14803301-14803481 Caenorhabditis elegans
Exon208222   239   V: 14803754-14803992 Caenorhabditis elegans
Exon208223   130   V: 14804680-14804809 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C48G7.3i.1 14784641 14804809 -1

1 Sequence

Length
4107

1 Sequence Ontology Term

Identifier Name Description
transcript