WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00304828 Gene Name  Y108F1.6
Sequence Name  ? Y108F1.6 Organism  Caenorhabditis elegans
Automated Description  Is affected by nitroguanidine based on microarray studies. Biotype  SO:0000336
Genetic Position  X:± Length (nt)  ? 532
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00304828

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

20 Allele

Public Name
gk963652
gk962800
gk964065
gk964321
WBVar02123605
WBVar01600257
WBVar01600258
WBVar02123945
WBVar02123727
WBVar02123607
WBVar02121495
otn2245
WBVar01617887
WBVar01617886
WBVar01617889
WBVar01617888
gk311151
gk268719
gk268718
gk268717

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00304828 270408 270939 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_270030..270407   378 X: 270030-270407 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly altered expression after 24 hour exposure to nitroguanidine (NQ). Multivariate permutation tests with random variance model implemented in BRB-Array Tools version 4.5 were performed to infer differentially expressed genes (DEGs). One thousand random permutations were computed per chemical class (i.e., a group of 16 arrays or samples). The confidence level of false discovery rate assessment was set at 80%, and the maximum allowed portion of false-positive genes was 10%. WBPaper00055899:nitroguanidine_regulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00304828 270408 270939 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
532

1 Sequence Ontology Term