WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57C12.1.1 Sequence Name  F57C12.1.1
Length (nt)  2296   Chromosome Location  X: 558157-563708
Chromosome . Primary Identifier  X Chromosome Location . Start  558157
Chromosome Location . End  563708 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57C12.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003554 nas-38 F57C12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57C12.1 F57C12.1 2184   X: 558190-558335

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F57C12.1.1 558157 563708 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon221953   179   X: 558157-558335 Caenorhabditis elegans
Exon221954   79   X: 558391-558469 Caenorhabditis elegans
Exon221955   117   X: 558843-558959 Caenorhabditis elegans
Exon221956   98   X: 559006-559103 Caenorhabditis elegans
Exon221957   130   X: 559492-559621 Caenorhabditis elegans
Exon221958   102   X: 559671-559772 Caenorhabditis elegans
Exon221959   109   X: 559833-559941 Caenorhabditis elegans
Exon221960   131   X: 559990-560120 Caenorhabditis elegans
Exon221961   168   X: 560334-560501 Caenorhabditis elegans
Exon221962   94   X: 561486-561579 Caenorhabditis elegans
Exon221963   251   X: 561624-561874 Caenorhabditis elegans
Exon221964   234   X: 562473-562706 Caenorhabditis elegans
Exon221965   95   X: 562750-562844 Caenorhabditis elegans
Exon221966   74   X: 562888-562961 Caenorhabditis elegans
Exon221967   106   X: 563182-563287 Caenorhabditis elegans
Exon221968   114   X: 563336-563449 Caenorhabditis elegans
Exon221969   215   X: 563494-563708 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F57C12.1.1 558157 563708 1

1 Sequence

Length
2296

1 Sequence Ontology Term

Identifier Name Description
transcript