WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57C12.5d.1 Sequence Name  F57C12.5d.1
Length (nt)  4847   Chromosome Location  X: 576320-587489
Chromosome . Primary Identifier  X Chromosome Location . Start  576320
Chromosome Location . End  587489 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57C12.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003407 mrp-1 F57C12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57C12.5d F57C12.5d 4605   X: 576487-576615

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F57C12.5d.1 576320 587489 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon221991   296   X: 576320-576615 Caenorhabditis elegans
Exon221996   178   X: 576667-576844 Caenorhabditis elegans
Exon222001   109   X: 578102-578210 Caenorhabditis elegans
Exon222006   460   X: 578257-578716 Caenorhabditis elegans
Exon222011   133   X: 578958-579090 Caenorhabditis elegans
Exon222016   122   X: 579138-579259 Caenorhabditis elegans
Exon222021   78   X: 579310-579387 Caenorhabditis elegans
Exon222023   156   X: 579498-579653 Caenorhabditis elegans
Exon222031   155   X: 581630-581784 Caenorhabditis elegans
Exon222036   510   X: 582173-582682 Caenorhabditis elegans
Exon222041   228   X: 582738-582965 Caenorhabditis elegans
Exon222046   142   X: 583011-583152 Caenorhabditis elegans
Exon222051   374   X: 583195-583568 Caenorhabditis elegans
Exon222056   235   X: 583636-583870 Caenorhabditis elegans
Exon222061   327   X: 583916-584242 Caenorhabditis elegans
Exon222066   660   X: 584287-584946 Caenorhabditis elegans
Exon222071   257   X: 585620-585876 Caenorhabditis elegans
Exon222076   124   X: 585925-586048 Caenorhabditis elegans
Exon222081   183   X: 586205-586387 Caenorhabditis elegans
Exon222086   120   X: 587370-587489 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F57C12.5d.1 576320 587489 -1

1 Sequence

Length
4847

1 Sequence Ontology Term

Identifier Name Description
transcript