WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52H2.2a.1 Sequence Name  F52H2.2a.1
Length (nt)  1750   Chromosome Location  X: 2554231-2557736
Chromosome . Primary Identifier  X Chromosome Location . Start  2554231
Chromosome Location . End  2557736 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52H2.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000004 aat-3 F52H2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52H2.2a F52H2.2a 1482   X: 2554238-2554297

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52H2.2a.1 2554231 2557736 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226015   67   X: 2554231-2554297 Caenorhabditis elegans
Exon226016   118   X: 2554358-2554475 Caenorhabditis elegans
Exon226018   190   X: 2555065-2555254 Caenorhabditis elegans
Exon226020   116   X: 2555312-2555427 Caenorhabditis elegans
Exon226022   126   X: 2555495-2555620 Caenorhabditis elegans
Exon226024   154   X: 2555673-2555826 Caenorhabditis elegans
Exon226026   124   X: 2555883-2556006 Caenorhabditis elegans
Exon226028   104   X: 2556054-2556157 Caenorhabditis elegans
Exon226030   97   X: 2556891-2556987 Caenorhabditis elegans
Exon226032   331   X: 2557036-2557366 Caenorhabditis elegans
Exon226035   323   X: 2557414-2557736 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52H2.2a.1 2554231 2557736 1

1 Sequence

Length
1750

1 Sequence Ontology Term

Identifier Name Description
transcript