WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.3c.1 Sequence Name  T02C5.3c.1
Length (nt)  2226   Chromosome Location  X: 2698250-2705856
Chromosome . Primary Identifier  X Chromosome Location . Start  2698250
Chromosome Location . End  2705856 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020160 igcm-3 T02C5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.3c T02C5.3c 1878   X: 2698598-2698756

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T02C5.3c.1 2698250 2705856 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226337   507   X: 2698250-2698756 Caenorhabditis elegans
Exon226347   79   X: 2699331-2699409 Caenorhabditis elegans
Exon226356   46   X: 2699462-2699507 Caenorhabditis elegans
Exon226367   140   X: 2700452-2700591 Caenorhabditis elegans
Exon226374   158   X: 2700990-2701147 Caenorhabditis elegans
Exon226381   542   X: 2701768-2702309 Caenorhabditis elegans
Exon226388   128   X: 2702365-2702492 Caenorhabditis elegans
Exon226395   132   X: 2702536-2702667 Caenorhabditis elegans
Exon226402   109   X: 2702928-2703036 Caenorhabditis elegans
Exon226411   79   X: 2703128-2703206 Caenorhabditis elegans
Exon226418   254   X: 2705505-2705758 Caenorhabditis elegans
Exon226419   52   X: 2705805-2705856 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T02C5.3c.1 2698250 2705856 -1

1 Sequence

Length
2226

1 Sequence Ontology Term

Identifier Name Description
transcript