WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.3b.1 Sequence Name  T02C5.3b.1
Length (nt)  2496   Chromosome Location  X: 2698257-2705859
Chromosome . Primary Identifier  X Chromosome Location . Start  2698257
Chromosome Location . End  2705859 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020160 igcm-3 T02C5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.3b T02C5.3b 1776   X: 2698974-2699030

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T02C5.3b.1 2698257 2705859 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226339   774   X: 2698257-2699030 Caenorhabditis elegans
Exon226346   79   X: 2699331-2699409 Caenorhabditis elegans
Exon226355   46   X: 2699462-2699507 Caenorhabditis elegans
Exon226366   140   X: 2700452-2700591 Caenorhabditis elegans
Exon226373   158   X: 2700990-2701147 Caenorhabditis elegans
Exon226380   542   X: 2701768-2702309 Caenorhabditis elegans
Exon226387   128   X: 2702365-2702492 Caenorhabditis elegans
Exon226394   132   X: 2702536-2702667 Caenorhabditis elegans
Exon226401   109   X: 2702928-2703036 Caenorhabditis elegans
Exon226410   79   X: 2703128-2703206 Caenorhabditis elegans
Exon226417   254   X: 2705505-2705758 Caenorhabditis elegans
Exon226421   55   X: 2705805-2705859 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T02C5.3b.1 2698257 2705859 -1

1 Sequence

Length
2496

1 Sequence Ontology Term

Identifier Name Description
transcript