WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.3d.1 Sequence Name  T02C5.3d.1
Length (nt)  1629   Chromosome Location  X: 2698974-2705663
Chromosome . Primary Identifier  X Chromosome Location . Start  2698974
Chromosome Location . End  2705663 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020160 igcm-3 T02C5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.3d T02C5.3d 1629   X: 2698974-2699030

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T02C5.3d.1 2698974 2705663 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226345   57   X: 2698974-2699030 Caenorhabditis elegans
Exon226348   79   X: 2699331-2699409 Caenorhabditis elegans
Exon226357   46   X: 2699462-2699507 Caenorhabditis elegans
Exon226368   140   X: 2700452-2700591 Caenorhabditis elegans
Exon226375   158   X: 2700990-2701147 Caenorhabditis elegans
Exon226382   542   X: 2701768-2702309 Caenorhabditis elegans
Exon226389   128   X: 2702365-2702492 Caenorhabditis elegans
Exon226396   132   X: 2702536-2702667 Caenorhabditis elegans
Exon226403   109   X: 2702928-2703036 Caenorhabditis elegans
Exon226412   79   X: 2703128-2703206 Caenorhabditis elegans
Exon226414   159   X: 2705505-2705663 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T02C5.3d.1 2698974 2705663 -1

1 Sequence

Length
1629

1 Sequence Ontology Term

Identifier Name Description
transcript