WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52B9.3b.1 Sequence Name  C52B9.3b.1
Length (nt)  1917   Chromosome Location  X: 4265663-4270554
Chromosome . Primary Identifier  X Chromosome Location . Start  4265663
Chromosome Location . End  4270554 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52B9.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016866 coel-1 C52B9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52B9.3b C52B9.3b 1257   X: 4265932-4266027

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52B9.3b.1 4265663 4270554 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon230243   365   X: 4265663-4266027 Caenorhabditis elegans
Exon230246   126   X: 4266076-4266201 Caenorhabditis elegans
Exon230248   111   X: 4266496-4266606 Caenorhabditis elegans
Exon230249   49   X: 4266902-4266950 Caenorhabditis elegans
Exon230251   106   X: 4266993-4267098 Caenorhabditis elegans
Exon230253   154   X: 4268078-4268231 Caenorhabditis elegans
Exon230255   219   X: 4268394-4268612 Caenorhabditis elegans
Exon230257   182   X: 4268665-4268846 Caenorhabditis elegans
Exon230259   151   X: 4268996-4269146 Caenorhabditis elegans
Exon230261   454   X: 4270101-4270554 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52B9.3b.1 4265663 4270554 1

1 Sequence

Length
1917

1 Sequence Ontology Term

Identifier Name Description
transcript