WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39C12.2c.1 Sequence Name  F39C12.2c.1
Length (nt)  2452   Chromosome Location  X: 4854069-4860045
Chromosome . Primary Identifier  X Chromosome Location . Start  4854069
Chromosome Location . End  4860045 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39C12.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000072 add-1 F39C12.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39C12.2c F39C12.2c 2109   X: 4854403-4854474

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F39C12.2c.1 4854069 4860045 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon231780   406   X: 4854069-4854474 Caenorhabditis elegans
Exon231784   44   X: 4854830-4854873 Caenorhabditis elegans
Exon231790   60   X: 4855152-4855211 Caenorhabditis elegans
Exon231794   102   X: 4855320-4855421 Caenorhabditis elegans
Exon231799   259   X: 4855716-4855974 Caenorhabditis elegans
Exon231804   213   X: 4856024-4856236 Caenorhabditis elegans
Exon231809   273   X: 4856781-4857053 Caenorhabditis elegans
Exon231814   86   X: 4857115-4857200 Caenorhabditis elegans
Exon231819   85   X: 4857256-4857340 Caenorhabditis elegans
Exon231824   99   X: 4857645-4857743 Caenorhabditis elegans
Exon231829   60   X: 4857801-4857860 Caenorhabditis elegans
Exon231834   168   X: 4858207-4858374 Caenorhabditis elegans
Exon231839   144   X: 4858423-4858566 Caenorhabditis elegans
Exon231845   143   X: 4858962-4859104 Caenorhabditis elegans
Exon231850   109   X: 4859427-4859535 Caenorhabditis elegans
Exon231855   93   X: 4859609-4859701 Caenorhabditis elegans
Exon231862   108   X: 4859938-4860045 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F39C12.2c.1 4854069 4860045 -1

1 Sequence

Length
2452

1 Sequence Ontology Term

Identifier Name Description
transcript