WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39C12.2a.1 Sequence Name  F39C12.2a.1
Length (nt)  2213   Chromosome Location  X: 4854080-4860036
Chromosome . Primary Identifier  X Chromosome Location . Start  4854080
Chromosome Location . End  4860036 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39C12.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000072 add-1 F39C12.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39C12.2a F39C12.2a 2040   X: 4854253-4854299

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F39C12.2a.1 4854080 4860036 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon231781   220   X: 4854080-4854299 Caenorhabditis elegans
Exon231788   60   X: 4855152-4855211 Caenorhabditis elegans
Exon231792   102   X: 4855320-4855421 Caenorhabditis elegans
Exon231797   259   X: 4855716-4855974 Caenorhabditis elegans
Exon231802   213   X: 4856024-4856236 Caenorhabditis elegans
Exon231807   273   X: 4856781-4857053 Caenorhabditis elegans
Exon231812   86   X: 4857115-4857200 Caenorhabditis elegans
Exon231817   85   X: 4857256-4857340 Caenorhabditis elegans
Exon231822   99   X: 4857645-4857743 Caenorhabditis elegans
Exon231827   60   X: 4857801-4857860 Caenorhabditis elegans
Exon231832   168   X: 4858207-4858374 Caenorhabditis elegans
Exon231837   144   X: 4858423-4858566 Caenorhabditis elegans
Exon231843   143   X: 4858962-4859104 Caenorhabditis elegans
Exon231848   109   X: 4859427-4859535 Caenorhabditis elegans
Exon231853   93   X: 4859609-4859701 Caenorhabditis elegans
Exon231858   99   X: 4859938-4860036 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F39C12.2a.1 4854080 4860036 -1

1 Sequence

Length
2213

1 Sequence Ontology Term

Identifier Name Description
transcript