WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C42D8.8b.1 Sequence Name  C42D8.8b.1
Length (nt)  2055   Chromosome Location  X: 5113100-5116864
Chromosome . Primary Identifier  X Chromosome Location . Start  5113100
Chromosome Location . End  5116864 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C42D8.8b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000149 apl-1 C42D8.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C42D8.8b C42D8.8b 2055   X: 5113100-5113420

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C42D8.8b.1 5113100 5116864 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232565   321   X: 5113100-5113420 Caenorhabditis elegans
Exon232566   123   X: 5113469-5113591 Caenorhabditis elegans
Exon232569   199   X: 5113650-5113848 Caenorhabditis elegans
Exon232571   183   X: 5113898-5114080 Caenorhabditis elegans
Exon232573   197   X: 5114124-5114320 Caenorhabditis elegans
Exon232575   210   X: 5114374-5114583 Caenorhabditis elegans
Exon232577   134   X: 5114723-5114856 Caenorhabditis elegans
Exon232579   93   X: 5114910-5115002 Caenorhabditis elegans
Exon232581   234   X: 5115139-5115372 Caenorhabditis elegans
Exon232583   127   X: 5115556-5115682 Caenorhabditis elegans
Exon232586   168   X: 5116171-5116338 Caenorhabditis elegans
Exon232587   66   X: 5116799-5116864 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C42D8.8b.1 5113100 5116864 -1

1 Sequence

Length
2055

1 Sequence Ontology Term

Identifier Name Description
transcript