WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T03G11.1d.1 Sequence Name  T03G11.1d.1
Length (nt)  3945   Chromosome Location  X: 5196131-5203792
Chromosome . Primary Identifier  X Chromosome Location . Start  5196131
Chromosome Location . End  5203792 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T03G11.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004145 pqn-62 T03G11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T03G11.1d T03G11.1d 3945   X: 5196131-5196226

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T03G11.1d.1 5196131 5203792 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232751   96   X: 5196131-5196226 Caenorhabditis elegans
Exon232753   132   X: 5197707-5197838 Caenorhabditis elegans
Exon232755   672   X: 5197964-5198635 Caenorhabditis elegans
Exon232759   321   X: 5198707-5199027 Caenorhabditis elegans
Exon232762   106   X: 5199072-5199177 Caenorhabditis elegans
Exon232765   169   X: 5199223-5199391 Caenorhabditis elegans
Exon232768   175   X: 5199569-5199743 Caenorhabditis elegans
Exon232773   122   X: 5200412-5200533 Caenorhabditis elegans
Exon232776   139   X: 5200576-5200714 Caenorhabditis elegans
Exon232779   211   X: 5200757-5200967 Caenorhabditis elegans
Exon232782   151   X: 5201012-5201162 Caenorhabditis elegans
Exon232785   165   X: 5201769-5201933 Caenorhabditis elegans
Exon232788   253   X: 5202048-5202300 Caenorhabditis elegans
Exon232791   105   X: 5202360-5202464 Caenorhabditis elegans
Exon232794   138   X: 5202515-5202652 Caenorhabditis elegans
Exon232797   763   X: 5202707-5203469 Caenorhabditis elegans
Exon232800   101   X: 5203520-5203620 Caenorhabditis elegans
Exon232801   126   X: 5203667-5203792 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T03G11.1d.1 5196131 5203792 1

1 Sequence

Length
3945

1 Sequence Ontology Term

Identifier Name Description
transcript