WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

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CDS :

WormMine ID  CDS:C54G7.3a Sequence Name  C54G7.3a
Length (nt)  4665   Chromosome Location  X: 5525342-5525530
Chromosome . Primary Identifier  X Chromosome Location . Start  5525342
Chromosome Location . End  5525530
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54G7.3a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE53211 LGX-1, isoform a 168.9 1554 Caenorhabditis elegans
 

Other

7 RNAi

WormBase ID
WBRNAi00000514
WBRNAi00001588
WBRNAi00043191
WBRNAi00111588
WBRNAi00111590
WBRNAi00111586
WBRNAi00111584

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C54G7.3a 5525342 5525530 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002983 lgx-1 C54G7.3 Caenorhabditis elegans

29 Locations


Feature . Primary Identifier
Start End Strand
CDS:C54G7.3a 5525342 5525530 -1
CDS:C54G7.3a 5525595 5525822 -1
CDS:C54G7.3a 5525965 5526228 -1
CDS:C54G7.3a 5526275 5526428 -1
CDS:C54G7.3a 5526476 5526592 -1
CDS:C54G7.3a 5526872 5526998 -1
CDS:C54G7.3a 5527046 5527183 -1
CDS:C54G7.3a 5527234 5527368 -1
CDS:C54G7.3a 5527425 5527571 -1
CDS:C54G7.3a 5527615 5527881 -1
CDS:C54G7.3a 5527932 5528013 -1
CDS:C54G7.3a 5528059 5528213 -1
CDS:C54G7.3a 5529270 5529380 -1
CDS:C54G7.3a 5529438 5529745 -1
CDS:C54G7.3a 5529794 5529915 -1
CDS:C54G7.3a 5529961 5530049 -1
CDS:C54G7.3a 5530629 5530778 -1
CDS:C54G7.3a 5530828 5530972 -1
CDS:C54G7.3a 5531025 5531110 -1
CDS:C54G7.3a 5531161 5531241 -1
CDS:C54G7.3a 5535225 5535356 -1
CDS:C54G7.3a 5535410 5535719 -1
CDS:C54G7.3a 5535765 5535871 -1
CDS:C54G7.3a 5536499 5536636 -1
CDS:C54G7.3a 5537025 5537427 -1
CDS:C54G7.3a 5537471 5537676 -1
CDS:C54G7.3a 5537727 5537842 -1
CDS:C54G7.3a 5538257 5538368 -1
CDS:C54G7.3a 5538416 5538461 -1

1 Sequence

Length
4665

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C54G7.3a.1 C54G7.3a.1 4937   X: 5525123-5538514