WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E10.5a.1 Sequence Name  F49E10.5a.1
Length (nt)  2834   Chromosome Location  X: 5862708-5873347
Chromosome . Primary Identifier  X Chromosome Location . Start  5862708
Chromosome Location . End  5873347 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E10.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006424 ctbp-1 F49E10.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E10.5a F49E10.5a 2184   X: 5862757-5862915

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F49E10.5a.1 5862708 5873347 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235134   208   X: 5862708-5862915 Caenorhabditis elegans
Exon235135   72   X: 5863169-5863240 Caenorhabditis elegans
Exon235136   109   X: 5863294-5863402 Caenorhabditis elegans
Exon235137   78   X: 5864555-5864632 Caenorhabditis elegans
Exon235146   78   X: 5869363-5869440 Caenorhabditis elegans
Exon235148   152   X: 5869500-5869651 Caenorhabditis elegans
Exon235151   145   X: 5870518-5870662 Caenorhabditis elegans
Exon235153   125   X: 5870709-5870833 Caenorhabditis elegans
Exon235155   191   X: 5870880-5871070 Caenorhabditis elegans
Exon235157   251   X: 5871125-5871375 Caenorhabditis elegans
Exon235159   98   X: 5871426-5871523 Caenorhabditis elegans
Exon235161   127   X: 5871966-5872092 Caenorhabditis elegans
Exon235164   1200   X: 5872148-5873347 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F49E10.5a.1 5862708 5873347 1

1 Sequence

Length
2834

1 Sequence Ontology Term

Identifier Name Description
transcript