WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T25B2.2c.1 Sequence Name  T25B2.2c.1
Length (nt)  1488   Chromosome Location  X: 6169774-6173748
Chromosome . Primary Identifier  X Chromosome Location . Start  6169774
Chromosome Location . End  6173748 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T25B2.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020786 T25B2.2 T25B2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T25B2.2c T25B2.2c 1242   X: 6169774-6169799

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T25B2.2c.1 6169774 6173748 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235988   26   X: 6169774-6169799 Caenorhabditis elegans
Exon235991   55   X: 6169848-6169902 Caenorhabditis elegans
Exon235994   75   X: 6169950-6170024 Caenorhabditis elegans
Exon235997   72   X: 6170196-6170267 Caenorhabditis elegans
Exon236000   117   X: 6170540-6170656 Caenorhabditis elegans
Exon236003   105   X: 6170700-6170804 Caenorhabditis elegans
Exon236006   210   X: 6171073-6171282 Caenorhabditis elegans
Exon236009   63   X: 6171342-6171404 Caenorhabditis elegans
Exon236012   39   X: 6171501-6171539 Caenorhabditis elegans
Exon236015   85   X: 6171633-6171717 Caenorhabditis elegans
Exon236018   86   X: 6172294-6172379 Caenorhabditis elegans
Exon236020   66   X: 6172429-6172494 Caenorhabditis elegans
Exon236024   65   X: 6172638-6172702 Caenorhabditis elegans
Exon236027   42   X: 6172750-6172791 Caenorhabditis elegans
Exon236030   25   X: 6173209-6173233 Caenorhabditis elegans
Exon236033   54   X: 6173280-6173333 Caenorhabditis elegans
Exon236036   66   X: 6173379-6173444 Caenorhabditis elegans
Exon236038   237   X: 6173512-6173748 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T25B2.2c.1 6169774 6173748 1

1 Sequence

Length
1488

1 Sequence Ontology Term

Identifier Name Description
transcript