WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D1.3e.1 Sequence Name  C54D1.3e.1
Length (nt)  3567   Chromosome Location  X: 7126651-7139270
Chromosome . Primary Identifier  X Chromosome Location . Start  7126651
Chromosome Location . End  7139270 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D1.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002163 ist-1 C54D1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D1.3e C54D1.3e 3567   X: 7126651-7126865

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.3e.1 7126651 7139270 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon238552   215   X: 7126651-7126865 Caenorhabditis elegans
Exon238555   185   X: 7132152-7132336 Caenorhabditis elegans
Exon238561   233   X: 7132891-7133123 Caenorhabditis elegans
Exon238565   138   X: 7133536-7133673 Caenorhabditis elegans
Exon238569   175   X: 7133732-7133906 Caenorhabditis elegans
Exon238573   124   X: 7133949-7134072 Caenorhabditis elegans
Exon238577   118   X: 7134127-7134244 Caenorhabditis elegans
Exon238581   188   X: 7134302-7134489 Caenorhabditis elegans
Exon238585   12   X: 7134541-7134552 Caenorhabditis elegans
Exon238587   231   X: 7135249-7135479 Caenorhabditis elegans
Exon238589   54   X: 7135529-7135582 Caenorhabditis elegans
Exon238593   222   X: 7135779-7136000 Caenorhabditis elegans
Exon238597   139   X: 7136051-7136189 Caenorhabditis elegans
Exon238601   201   X: 7136240-7136440 Caenorhabditis elegans
Exon238605   245   X: 7136880-7137124 Caenorhabditis elegans
Exon238609   162   X: 7137174-7137335 Caenorhabditis elegans
Exon238613   482   X: 7137385-7137866 Caenorhabditis elegans
Exon238617   145   X: 7138777-7138921 Caenorhabditis elegans
Exon238620   298   X: 7138973-7139270 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.3e.1 7126651 7139270 1

1 Sequence

Length
3567

1 Sequence Ontology Term

Identifier Name Description
transcript