WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D2.5a.3 Sequence Name  C54D2.5a.3
Length (nt)  6133   Chromosome Location  X: 7847682-7861308
Chromosome . Primary Identifier  X Chromosome Location . Start  7847682
Chromosome Location . End  7861308 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D2.5a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D2.5a C54D2.5a 5514   X: 7848224-7848278

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5a.3 7847682 7861308 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240682   597   X: 7847682-7848278 Caenorhabditis elegans
Exon240690   167   X: 7848334-7848500 Caenorhabditis elegans
Exon240697   179   X: 7849296-7849474 Caenorhabditis elegans
Exon240704   199   X: 7849590-7849788 Caenorhabditis elegans
Exon240711   201   X: 7850445-7850645 Caenorhabditis elegans
Exon240718   359   X: 7850689-7851047 Caenorhabditis elegans
Exon240725   105   X: 7851091-7851195 Caenorhabditis elegans
Exon240732   518   X: 7852006-7852523 Caenorhabditis elegans
Exon240739   242   X: 7852580-7852821 Caenorhabditis elegans
Exon240746   810   X: 7852865-7853674 Caenorhabditis elegans
Exon240753   180   X: 7853723-7853902 Caenorhabditis elegans
Exon240763   130   X: 7854299-7854428 Caenorhabditis elegans
Exon240768   186   X: 7854524-7854709 Caenorhabditis elegans
Exon240775   502   X: 7854757-7855258 Caenorhabditis elegans
Exon240782   127   X: 7855305-7855431 Caenorhabditis elegans
Exon240789   119   X: 7855479-7855597 Caenorhabditis elegans
Exon240796   127   X: 7855643-7855769 Caenorhabditis elegans
Exon240803   93   X: 7855816-7855908 Caenorhabditis elegans
Exon240810   75   X: 7855960-7856034 Caenorhabditis elegans
Exon240817   82   X: 7856086-7856167 Caenorhabditis elegans
Exon240824   108   X: 7856215-7856322 Caenorhabditis elegans
Exon240831   78   X: 7856396-7856473 Caenorhabditis elegans
Exon240838   234   X: 7856523-7856756 Caenorhabditis elegans
Exon240845   92   X: 7857325-7857416 Caenorhabditis elegans
Exon240852   235   X: 7857466-7857700 Caenorhabditis elegans
Exon240859   104   X: 7857749-7857852 Caenorhabditis elegans
Exon240866   57   X: 7858270-7858326 Caenorhabditis elegans
Exon240873   82   X: 7860000-7860081 Caenorhabditis elegans
Exon240885   145   X: 7861164-7861308 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5a.3 7847682 7861308 -1

1 Sequence

Length
6133

1 Sequence Ontology Term

Identifier Name Description
transcript