WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D2.5d.1 Sequence Name  C54D2.5d.1
Length (nt)  6273   Chromosome Location  X: 7847685-7861307
Chromosome . Primary Identifier  X Chromosome Location . Start  7847685
Chromosome Location . End  7861307 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D2.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D2.5d C54D2.5d 5658   X: 7848224-7848278

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5d.1 7847685 7861307 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

30 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240684   594   X: 7847685-7848278 Caenorhabditis elegans
Exon240692   167   X: 7848334-7848500 Caenorhabditis elegans
Exon240699   179   X: 7849296-7849474 Caenorhabditis elegans
Exon240706   199   X: 7849590-7849788 Caenorhabditis elegans
Exon240713   201   X: 7850445-7850645 Caenorhabditis elegans
Exon240720   359   X: 7850689-7851047 Caenorhabditis elegans
Exon240726   105   X: 7851091-7851195 Caenorhabditis elegans
Exon240734   518   X: 7852006-7852523 Caenorhabditis elegans
Exon240741   242   X: 7852580-7852821 Caenorhabditis elegans
Exon240748   810   X: 7852865-7853674 Caenorhabditis elegans
Exon240755   180   X: 7853723-7853902 Caenorhabditis elegans
Exon240758   151   X: 7854051-7854201 Caenorhabditis elegans
Exon240765   123   X: 7854306-7854428 Caenorhabditis elegans
Exon240770   186   X: 7854524-7854709 Caenorhabditis elegans
Exon240777   502   X: 7854757-7855258 Caenorhabditis elegans
Exon240784   127   X: 7855305-7855431 Caenorhabditis elegans
Exon240791   119   X: 7855479-7855597 Caenorhabditis elegans
Exon240798   127   X: 7855643-7855769 Caenorhabditis elegans
Exon240805   93   X: 7855816-7855908 Caenorhabditis elegans
Exon240812   75   X: 7855960-7856034 Caenorhabditis elegans
Exon240819   82   X: 7856086-7856167 Caenorhabditis elegans
Exon240826   108   X: 7856215-7856322 Caenorhabditis elegans
Exon240833   78   X: 7856396-7856473 Caenorhabditis elegans
Exon240840   234   X: 7856523-7856756 Caenorhabditis elegans
Exon240847   92   X: 7857325-7857416 Caenorhabditis elegans
Exon240854   235   X: 7857466-7857700 Caenorhabditis elegans
Exon240861   104   X: 7857749-7857852 Caenorhabditis elegans
Exon240868   57   X: 7858270-7858326 Caenorhabditis elegans
Exon240875   82   X: 7860000-7860081 Caenorhabditis elegans
Exon240883   144   X: 7861164-7861307 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5d.1 7847685 7861307 -1

1 Sequence

Length
6273

1 Sequence Ontology Term

Identifier Name Description
transcript