WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.1a.1 Sequence Name  F49E2.1a.1
Length (nt)  1868   Chromosome Location  X: 9561844-9565981
Chromosome . Primary Identifier  X Chromosome Location . Start  9561844
Chromosome Location . End  9565981 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009885 moc-5 F49E2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.1a F49E2.1a 1170   X: 9563259-9563314

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F49E2.1a.1 9561844 9565981 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon246280   199   X: 9561844-9562042 Caenorhabditis elegans
Exon246285   183   X: 9562092-9562274 Caenorhabditis elegans
Exon246293   72   X: 9562328-9562399 Caenorhabditis elegans
Exon246299   116   X: 9562926-9563041 Caenorhabditis elegans
Exon246307   120   X: 9563089-9563208 Caenorhabditis elegans
Exon246316   62   X: 9563253-9563314 Caenorhabditis elegans
Exon246324   121   X: 9563364-9563484 Caenorhabditis elegans
Exon246333   339   X: 9564560-9564898 Caenorhabditis elegans
Exon246338   120   X: 9564956-9565075 Caenorhabditis elegans
Exon246343   104   X: 9565283-9565386 Caenorhabditis elegans
Exon246348   265   X: 9565444-9565708 Caenorhabditis elegans
Exon246354   167   X: 9565815-9565981 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F49E2.1a.1 9561844 9565981 -1

1 Sequence

Length
1868

1 Sequence Ontology Term

Identifier Name Description
transcript