WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:R08B4.1.1 Sequence Name  R08B4.1.1
Length (nt)  3817   Chromosome Location  X: 11109440-11115887
Chromosome . Primary Identifier  X Chromosome Location . Start  11109440
Chromosome Location . End  11115887 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08B4.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001690 grd-1 R08B4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R08B4.1 R08B4.1 3414   X: 11109626-11109764

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R08B4.1.1 11109440 11115887 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon251944   325   X: 11109440-11109764 Caenorhabditis elegans
Exon251946   119   X: 11110744-11110862 Caenorhabditis elegans
Exon251948   156   X: 11110923-11111078 Caenorhabditis elegans
Exon251950   202   X: 11111735-11111936 Caenorhabditis elegans
Exon251952   246   X: 11111982-11112227 Caenorhabditis elegans
Exon251954   107   X: 11112429-11112535 Caenorhabditis elegans
Exon251956   975   X: 11112649-11113623 Caenorhabditis elegans
Exon251958   375   X: 11113673-11114047 Caenorhabditis elegans
Exon251960   43   X: 11114093-11114135 Caenorhabditis elegans
Exon251962   251   X: 11114254-11114504 Caenorhabditis elegans
Exon251964   279   X: 11114554-11114832 Caenorhabditis elegans
Exon251966   136   X: 11114878-11115013 Caenorhabditis elegans
Exon251968   257   X: 11115185-11115441 Caenorhabditis elegans
Exon251970   60   X: 11115484-11115543 Caenorhabditis elegans
Exon251973   286   X: 11115602-11115887 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R08B4.1.1 11109440 11115887 1

1 Sequence

Length
3817

1 Sequence Ontology Term

Identifier Name Description
transcript