WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F45E6.2.1 Sequence Name  F45E6.2.1
Length (nt)  2402   Chromosome Location  X: 12480948-12484904
Chromosome . Primary Identifier  X Chromosome Location . Start  12480948
Chromosome Location . End  12484904 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F45E6.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000222 atf-6 F45E6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F45E6.2 F45E6.2 1770   X: 12480948-12481040

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F45E6.2.1 12480948 12484904 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon255611   93   X: 12480948-12481040 Caenorhabditis elegans
Exon255612   192   X: 12481097-12481288 Caenorhabditis elegans
Exon255613   276   X: 12481581-12481856 Caenorhabditis elegans
Exon255614   171   X: 12481905-12482075 Caenorhabditis elegans
Exon255615   177   X: 12482126-12482302 Caenorhabditis elegans
Exon255616   240   X: 12482351-12482590 Caenorhabditis elegans
Exon255617   86   X: 12482637-12482722 Caenorhabditis elegans
Exon255618   231   X: 12482772-12483002 Caenorhabditis elegans
Exon255619   217   X: 12483235-12483451 Caenorhabditis elegans
Exon255620   719   X: 12484186-12484904 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F45E6.2.1 12480948 12484904 1

1 Sequence

Length
2402

1 Sequence Ontology Term

Identifier Name Description
transcript