WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C40C9.1.1 Sequence Name  C40C9.1.1
Length (nt)  1198   Chromosome Location  X: 13639877-13642359
Chromosome . Primary Identifier  X Chromosome Location . Start  13639877
Chromosome Location . End  13642359 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C40C9.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006673 twk-20 C40C9.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C40C9.1 C40C9.1 1095   X: 13639877-13639976

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.1.1 13639877 13642359 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon258086   100   X: 13639877-13639976 Caenorhabditis elegans
Exon258087   79   X: 13640219-13640297 Caenorhabditis elegans
Exon258088   113   X: 13640499-13640611 Caenorhabditis elegans
Exon258089   143   X: 13640667-13640809 Caenorhabditis elegans
Exon258090   45   X: 13640858-13640902 Caenorhabditis elegans
Exon258091   61   X: 13640944-13641004 Caenorhabditis elegans
Exon258092   69   X: 13641086-13641154 Caenorhabditis elegans
Exon258093   145   X: 13641200-13641344 Caenorhabditis elegans
Exon258094   81   X: 13641392-13641472 Caenorhabditis elegans
Exon258095   82   X: 13641536-13641617 Caenorhabditis elegans
Exon258096   56   X: 13642035-13642090 Caenorhabditis elegans
Exon258097   224   X: 13642136-13642359 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.1.1 13639877 13642359 1

1 Sequence

Length
1198

1 Sequence Ontology Term

Identifier Name Description
transcript