WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:C04A11.3a.1 Sequence Name  C04A11.3a.1
Length (nt)  4017   Chromosome Location  X: 13677192-13682340
Chromosome . Primary Identifier  X Chromosome Location . Start  13677192
Chromosome Location . End  13682340 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04A11.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007287 gck-4 C04A11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04A11.3a C04A11.3a 3687   X: 13677260-13677334

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04A11.3a.1 13677192 13682340 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon258165   143   X: 13677192-13677334 Caenorhabditis elegans
Exon258167   246   X: 13677385-13677630 Caenorhabditis elegans
Exon258169   272   X: 13677873-13678144 Caenorhabditis elegans
Exon258171   634   X: 13678202-13678835 Caenorhabditis elegans
Exon258173   397   X: 13678934-13679330 Caenorhabditis elegans
Exon258175   246   X: 13679401-13679646 Caenorhabditis elegans
Exon258177   625   X: 13679753-13680377 Caenorhabditis elegans
Exon258179   576   X: 13680504-13681079 Caenorhabditis elegans
Exon258181   229   X: 13681127-13681355 Caenorhabditis elegans
Exon258184   141   X: 13681411-13681551 Caenorhabditis elegans
Exon258185   138   X: 13681602-13681739 Caenorhabditis elegans
Exon258187   370   X: 13681971-13682340 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04A11.3a.1 13677192 13682340 1

1 Sequence

Length
4017

1 Sequence Ontology Term

Identifier Name Description
transcript