WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T21H8.1i.1 Sequence Name  T21H8.1i.1
Length (nt)  3321   Chromosome Location  X: 13865035-13881020
Chromosome . Primary Identifier  X Chromosome Location . Start  13865035
Chromosome Location . End  13881020 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T21H8.1i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011904 hlb-1 T21H8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T21H8.1i T21H8.1i 2811   X: 13865539-13865577

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T21H8.1i.1 13865035 13881020 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon258500   543   X: 13865035-13865577 Caenorhabditis elegans
Exon258522   111   X: 13865744-13865854 Caenorhabditis elegans
Exon258539   189   X: 13865906-13866094 Caenorhabditis elegans
Exon258556   138   X: 13866400-13866537 Caenorhabditis elegans
Exon258573   707   X: 13866590-13867296 Caenorhabditis elegans
Exon258594   61   X: 13868032-13868092 Caenorhabditis elegans
Exon258607   127   X: 13868147-13868273 Caenorhabditis elegans
Exon258624   314   X: 13868448-13868761 Caenorhabditis elegans
Exon258641   246   X: 13868859-13869104 Caenorhabditis elegans
Exon258654   141   X: 13869748-13869888 Caenorhabditis elegans
Exon258669   114   X: 13870263-13870376 Caenorhabditis elegans
Exon258684   102   X: 13870431-13870532 Caenorhabditis elegans
Exon258712   188   X: 13876517-13876704 Caenorhabditis elegans
Exon258719   87   X: 13877266-13877352 Caenorhabditis elegans
Exon258731   174   X: 13877409-13877582 Caenorhabditis elegans
Exon258741   79   X: 13880942-13881020 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T21H8.1i.1 13865035 13881020 -1

1 Sequence

Length
3321

1 Sequence Ontology Term

Identifier Name Description
transcript