WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:K08A8.2b Sequence Name  K08A8.2b
Length (nt)  600   Chromosome Location  X: 7459017-7459397
Chromosome . Primary Identifier  X Chromosome Location . Start  7459017
Chromosome Location . End  7459397
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

0 Synonyms

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE31200 SOX-2, isoform b 22.7 199 Caenorhabditis elegans
 

Other

25 RNAi

WormBase ID
WBRNAi00064489
WBRNAi00064732
WBRNAi00050218
WBRNAi00008969
WBRNAi00025911
WBRNAi00073201
WBRNAi00073202
WBRNAi00099857
WBRNAi00100444
WBRNAi00068539
WBRNAi00068538
WBRNAi00068541
WBRNAi00068540
WBRNAi00068542
WBRNAi00068982
WBRNAi00100818
WBRNAi00099251
WBRNAi00099655
WBRNAi00099453
WBRNAi00100070
WBRNAi00034101
WBRNAi00064172
WBRNAi00101005
WBRNAi00100631
WBRNAi00100257

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004949 sox-2 K08A8.2 Caenorhabditis elegans

0 Locations

1 Sequence

Length
600

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K08A8.2b.2 K08A8.2b.2 1466   X: 7458282-7460311
Transcript:K08A8.2b.3 K08A8.2b.3 1344   X: 7458286-7459752
Transcript:K08A8.2b.1 K08A8.2b.1 866   X: 7459017-7463736