WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K08A8.2b.2 Sequence Name  K08A8.2b.2
Length (nt)  1466   Chromosome Location  X: 7458282-7460311
Chromosome . Primary Identifier  X Chromosome Location . Start  7458282
Chromosome Location . End  7460311 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K08A8.2b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004949 sox-2 K08A8.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K08A8.2b K08A8.2b 600   X: 7459017-7459397

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K08A8.2b.2 7458282 7460311 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

4 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon239452   1116   X: 7458282-7459397 Caenorhabditis elegans
Exon239459   105   X: 7459450-7459554 Caenorhabditis elegans
Exon239464   126   X: 7459626-7459751 Caenorhabditis elegans
Exon239468   119   X: 7460193-7460311 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K08A8.2b.2 7458282 7460311 -1

1 Sequence

Length
1466

1 Sequence Ontology Term

Identifier Name Description
transcript