WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Expressed in intestine, pharynx, pharyngeal intestinal valve, mu_sph, and excretory cell at unspecified stage(es). Expression in ventral nerve cord, spermathecae and germ line observed with immunostaining but not GFP reporter gene. Pharyngeal results differ slightly from GFP reporter gene results (see Expression pattern 503). Primary Identifier  Expr504
Remark  Transgenic Marker: rol-6(su1006) Subcellular Localization  ITR-1 present in membrane preparations by Western blotting.

7 Anatomy Terms

Definition Name Synonym Primary Identifier
an accordion-like tube that contains sperm and is the site of oocyte fertilization. spermatheca   WBbt:0005319
A group of six equivalent cells forms a tightly constructed `valve` that links the posterior bulb of the pharynx to the anterior four cells of the intestine. These six cells comprise a small epithelial channel with a cuticular lining in continuity with the pharyngeal cuticle and link the lumen of the pharynx to the large lumen of the anterior intestine. pharyngeal-intestinal valve cardia WBbt:0005767
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. intestine gut WBbt:0005772
a large process bundle that runs along the vental mid-line extending from the ventral region of the nerve ring. ventral nerve cord ventral cord WBbt:0005829
the feeding organ, a neuro-muscular pump in the head of the animal, used to ingest food, bacteria suspended in liquid, filter them out, grind them up and transport posteriorly into the instestine. pharynx esophagus WBbt:0003681
a saddle-shaped muscle cell that encircles the intestinal-rectal valve anal sphincter muscle lineage name: ABprpppppap WBbt:0005798
cell line which early in development becomes differentiated from the remaining somatic cell line, and alone has the potential to undergo meiosis and form gametes. germ line germline WBbt:0005784

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002173 itr-1 F33D4.2 Caenorhabditis elegans

0 Life Stages