WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  First detected in late embryonic stage and continues to be detected through to adulthood. Intensity is higher in animals undergoing ecdysis. Subcellular accumulation generally enriched in nuclei relative to cytoplasm. Cytoplasmic signal is enhanced in lateral seam cells during the molt periods. There is a period of cytokinesis where LIN-42::GFP is not observed. L3 molt: Higher intensity in seam cells, but most intense in V1.pppp. Cells that stain at this stage: H1.aa, V4.papp, H1.app, V5.pppp, H2.ppp V6.papp, V2.papp V6.pppp, V2.pppp, V3.papp, V3.pppp, V4.pppp. L4 molt higher intensity of staining observed in the cytoplasm of seam cell. LIN-42::GFP is present in lateral hypodermis, hyp7 synctium which includes main body hypodermis and head and tail hypodermal cells. Primary Identifier  Expr691
Remark  This information was extracted from published material (Archana Sharma-Oates, Andrew Mounsey and Ian A. Hope). Subcellular Localization  Expressed in cytoplasm of seam cell during L4 molt.
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28 Anatomy Terms

Definition Name Synonym Primary Identifier
a group of hypodermal cells that lie along the apical midline of the hypodermis, at the extreme left and right sides between nose and tail seam cell lateral hypodermis WBbt:0005753
entire syncytium of hyp7 hyp7 syncytium hyp7 WBbt:0005734
Postembryonic seam hypodermal cells, make alae; of pedigree H1L.aa. H1L.aa lineage name: H1L.aa WBbt:0004775
Postembryonic seam hypodermal cells, make alae; of pedigree H1R.aa. H1R.aa lineage name: H1R.aa WBbt:0004773
post-embryonic cell of pedigree V1L.pppp V1L.pppp   WBbt:0007396
post-embryonic cell of pedigree V5L.pppp V5L.pppp   WBbt:0007455
post-embryonic cell of pedigree V5R.pppp V5R.pppp   WBbt:0007472
post-embryonic cell of pedigree V3R.pppp V3R.pppp   WBbt:0007431
post-embryonic cell of pedigree V4L.papp V4L.papp   WBbt:0007435
post-embryonic cell of pedigree V4L.pppp V4L.pppp   WBbt:0007438
post-embryonic cell of pedigree V4R.papp V4R.papp   WBbt:0007442
post-embryonic cell of pedigree V4R.pppp V4R.pppp   WBbt:0007445
post-embryonic cell of pedigree V2L.pppp V2L.pppp   WBbt:0007410
post-embryonic cell of pedigree V2R.papp V2R.papp   WBbt:0007414
post-embryonic cell of pedigree V2R.pppp V2R.pppp   WBbt:0007417
post-embryonic cell of pedigree V3L.papp V3L.papp   WBbt:0007421
post-embryonic cell of pedigree V3L.pppp V3L.pppp   WBbt:0007424
post-embryonic cell of pedigree V3R.papp V3R.papp   WBbt:0007428
post-embryonic cell of pedigree V1R.pppp V1R.pppp   WBbt:0007403
post-embryonic cell of pedigree V2L.papp V2L.papp   WBbt:0007407
post-embryonic cell of pedigree V6L.papp V6L.papp   WBbt:0007491
post-embryonic cell of pedigree V6L.pppp V6L.pppp   WBbt:0007509
post-embryonic cell of pedigree V6R.pppp V6R.pppp   WBbt:0007553
post-embryonic cell of pedigree V6R.papp V6R.papp   WBbt:0007535
post-embryonic cell of pedigree H2L.ppp H2L.ppp   WBbt:0007155
post-embryonic cell of pedigree H2R.ppp H2R.ppp   WBbt:0007159
post-embryonic cell of pedigree H1L.app H1L.app   WBbt:0007148
post-embryonic cell of pedigree H1R.app H1R.app   WBbt:0007151

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018572 lin-42 F47F6.1 Caenorhabditis elegans

6 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003