WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Anatomy Term :

Definition  inner tube of two concentric tubes that make up the body Name  digestive tract
Primary Identifier  WBbt:0005743

3 Children

Definition Name Synonym Primary Identifier
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. intestine gut WBbt:0005772
the feeding organ, a neuro-muscular pump in the head of the animal, used to ingest food, bacteria suspended in liquid, filter them out, grind them up and transport posteriorly into the instestine. pharynx esophagus WBbt:0003681
Portion of the digestive tract between the oral opening and the definitely tri-radiate beginning of the esophagus (pharynx). stoma   WBbt:0008374

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Proteins that are enriched in digestive tract of adult female Brugia malayi. Protein quantitation was determined by normalized spectral abundance.Proteins with NSAF enrichment values of 2 or greater were were considered enriched within that fraction. WBPaper00048706:digestive-tract_enriched
  Proteins that are only expressed in digestive tract of adult female Brugia malayi. Protein quantitation was determined by normalized spectral abundance.Proteins with NSAF enrichment values of 2 or greater were were considered enriched within that fraction. WBPaper00048706:digestive-tract_only

9 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr1200066 Data from the TransgeneOme project  
    Expr1200380 Data from the TransgeneOme project  
    Expr1200005 Data from the TransgeneOme project  
    Expr1200068 Data from the TransgeneOme project  
    Expr1200002 Data from the TransgeneOme project  
    Expr1200109 Data from the TransgeneOme project  
    Expr1200018 Data from the TransgeneOme project  
    Expr1200050 Data from the TransgeneOme project  
    Expr10531 atf-2::gfp expresses in the excretory duct cell, as well as other cells in the animal including the excretory pore cell and cells of the egg-laying and digestive systems (data not shown). atf-2::gfp expression initiates in the embryo and persists into larval and adult stages.  

0 Life Stages

1 Parents

Definition Name Synonym Primary Identifier
region of the body by which tissues, cells or cell parts are classified body region   WBbt:0005738