WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred Expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10422
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166 Anatomy Terms

Definition Name Synonym Primary Identifier
The tenth (count from anterior-most) of twelve postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1. P10   WBbt:0006779
embryonic cell ABprapapaa QV5R WBbt:0006282
Postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1 P11 lineage name: ABplapappa WBbt:0004410
Postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1 P12 lineage name: ABprapappa WBbt:0004409
Seam hypodermal cell, postembryonic blast cell V3R lineage name: ABprappapa WBbt:0004896
embryonic cell ABalapapp   WBbt:0006132
embryonic cell ABalapapa   WBbt:0006314
embryonic cell ABalaappa   WBbt:0006037
embryonic cell ABalpaaap   WBbt:0005850
embryonic cell ABplaapap   WBbt:0005887
embryonic cell ABplaapaa   WBbt:0005866
embryonic cell ABpraaapa   WBbt:0005895
embryonic cell ABplaappp   WBbt:0005948
embryonic cell Dapa   WBbt:0006004
embryonic cell ABalppaap   WBbt:0006020
embryonic cell ABpraappa   WBbt:0006035
embryonic cell ABpraapap   WBbt:0006062
embryonic cell ABplpaaaa   WBbt:0006099
embryonic cell ABplpaapa   WBbt:0006115
embryonic cell ABpraapaa   WBbt:0006108
embryonic cell ABaraaaaa   WBbt:0006135
embryonic cell ABalppaaa   WBbt:0006129
embryonic cell ABplaaapp   WBbt:0006136
embryonic cell ABalpaapa   WBbt:0006181
embryonic cell ABalpaaaa   WBbt:0006198
embryonic cell ABplpaaap   WBbt:0006313
embryonic cell ABaraaaap   WBbt:0006311
embryonic cell ABalppppa   WBbt:0006316
embryonic cell ABplaaaaa   WBbt:0006348
embryonic cell ABalpppaa   WBbt:0006400

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020093 R144.3 R144.3 Caenorhabditis elegans

377 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 171st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 171 min post first-cleavage Ce WBls:0000282
  The time period encompassing the 172nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 172 min post first-cleavage Ce WBls:0000283
  The time period encompassing the 179th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 179 min post first-cleavage Ce WBls:0000290
  The time period encompassing the 178th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 178 min post first-cleavage Ce WBls:0000289
  The time period encompassing the 177th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 177 min post first-cleavage Ce WBls:0000288
  The time period encompassing the 176th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 176 min post first-cleavage Ce WBls:0000287
  The time period encompassing the 183rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 183 min post first-cleavage Ce WBls:0000294
  The time period encompassing the 182nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 182 min post first-cleavage Ce WBls:0000293
  The time period encompassing the 181st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 181 min post first-cleavage Ce WBls:0000292
  The time period encompassing the 180th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 180 min post first-cleavage Ce WBls:0000291
  The time period encompassing the 187th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 187 min post first-cleavage Ce WBls:0000298
  The time period encompassing the 186th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 186 min post first-cleavage Ce WBls:0000297
  The time period encompassing the 185th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 185 min post first-cleavage Ce WBls:0000296
  The time period encompassing the 184th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 184 min post first-cleavage Ce WBls:0000295
  The time period encompassing the 191st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 191 min post first-cleavage Ce WBls:0000302
  The time period encompassing the 190th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 190 min post first-cleavage Ce WBls:0000301
  The time period encompassing the 189th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 189 min post first-cleavage Ce WBls:0000300
  The time period encompassing the 188th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 188 min post first-cleavage Ce WBls:0000299
  The time period encompassing the 195th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 195 min post first-cleavage Ce WBls:0000306
  The time period encompassing the 194th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 194 min post first-cleavage Ce WBls:0000305
  The time period encompassing the 193rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 193 min post first-cleavage Ce WBls:0000304
  The time period encompassing the 192nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 192 min post first-cleavage Ce WBls:0000303
  The time period encompassing the 199th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 199 min post first-cleavage Ce WBls:0000310
  The time period encompassing the 198th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 198 min post first-cleavage Ce WBls:0000309
  The time period encompassing the 197th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 197 min post first-cleavage Ce WBls:0000308
  The time period encompassing the 196th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 196 min post first-cleavage Ce WBls:0000307
  The time period encompassing the 203rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 203 min post first-cleavage Ce WBls:0000314
  The time period encompassing the 202nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 202 min post first-cleavage Ce WBls:0000313
  The time period encompassing the 201st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 201 min post first-cleavage Ce WBls:0000312
  The time period encompassing the 200th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 200 min post first-cleavage Ce WBls:0000311