WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Anatomy Term :

Definition  post-deirid socket cell. Name  PDE socket cell
Primary Identifier  WBbt:0008421

2 Children

Definition Name Synonym Primary Identifier
Socket of PDE PDEsoL lineage name: V5L.papa WBbt:0004369
Socket of PDE PDEsoR lineage name: V5R.papa WBbt:0004368

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Single-cell RNA-Seq cell group 21_1 with unidentified tissue expression pattern. scVI 0.6.0 WBPaper00065841:21_1
  Top 300 transcripts enriched in ADE sheath cell, ADE socket cell, amphid sheath cell, amphid socket cell, cephalic sheath cell, CEP socket cell, IL sheath cell, IL socket cell, OL sheath cell, OL socket cell, PDE sheath cell, PDE socket cell, phasmid sheath cell, phasmid socket cell according to single cell RNAseq. Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. WBPaper00061340:Glia

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr9197 No expression from the transgene is seen in embryonic stages. GFP expression is detected in glial cells associated with amphid, phasmid, labial and posterior deirids (PDE) sensory neurons as early as the L1 stage and continuing throughout larval development. Expression is also seen in vulval tissue in L4 and adult animals.  

0 Life Stages

1 Parents

Definition Name Synonym Primary Identifier
An interfacial epithelial cell which forms a distal cap on a sheath cell to bind the sheath of a sensillum to the neighboring hypodermis, via adherens junctions. There is often a narrow opening through the socket from the exterior into the sheath channel, allowing ciliated dendrites to be exposed to the external environment. The socket cell functions similarly to a glial cell. socket cell   WBbt:0005750