WormMine: LifeStage WBls:0000673

• Definition: At 20 Centigrade: 9-10 days after L4-adult molt. 12-13 days after first cleavage.
• Primary Identifier: WBls:0000673
• Public Name: 9-days post-L4 adult hermaphrodite Ce

0 Anatomy Terms

2 Contained In

Remark	Definition	Other Name	Public Name	Primary Identifier
	The stage after an hermaphrodite animal is fully-developed and reaches maturity.		adult hermaphrodite Ce	WBls:0000057
	A C. elegans life stage that occurs during the adult life stage		C. elegans life stage occurring during adulthood	WBls:0000816

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that were enriched in muscle in day 12 animals, according to trans-splicing-based RNA tagging (SRT) and RNAseq.	DESeq and Benjamini-Hochberg adjusted p-values were used.	WBPaper00050053:muscle_enriched_Day12
	Transcripts that showed significantly increased expression in dcap-1(tm3163) comparing to in N2 animals on the 9th day of adulthood.	Differential expression analysis was performed by using the limma package of the Bioconductor suite in R. Fold change > 2, FDR < 0.05.	WBPaper00065043:dcap-1(tm3163)_upregulated
	Neuronal proteins that showed significantly increased expression in day 9 adult comparing to in day 1 adult through in vivo TurboIDlabeling proteomic profiling.	DESeq2, log2FC > 1, FDR < 0.05	WBPaper00064789:Day9_vs_Day1_upregulated_neuron
	Neuronal proteins that showed significantly decreased expression in day 9 adult comparing to in day 1 adult through in vivo TurboIDlabeling proteomic profiling.	DESeq2, log2FC > 1, FDR < 0.05	WBPaper00064789:Day9_vs_Day1_downregulated_neuron
	Genes downregulated on Rifampicin treatment determined by Microarray analysis.	The primary data was analyzed with Affymetrix Expression Console. Further differential gene expression was performed using Genespring GX 11.1 with Affymetrix default analysis settings and RMA was used for normalization. The probes of intensities less than 20 percentile in the raw data were excluded prior to differential gene expression analysis. More than two fold expression changes with p value <0.05 (student's t test) are reported.	WBPaper00046496:Rifampicin_downregulated
	Genes upregulated on Rifampicin treatment determined by Microarray analysis.	The primary data was analyzed with Affymetrix Expression Console. Further differential gene expression was performed using Genespring GX 11.1 with Affymetrix default analysis settings and RMA was used for normalization. The probes of intensities less than 20 percentile in the raw data were excluded prior to differential gene expression analysis. More than two fold expression changes with p value <0.05 (student's t test) are reported.	WBPaper00046496:Rifampicin_upregulated
	Transcripts that showed significantly decreased expression in dcap-1(tm3163) comparing to in N2 animals on the 9th day of adulthood.	Differential expression analysis was performed by using the limma package of the Bioconductor suite in R. Fold change > 2, FDR < 0.05.	WBPaper00065043:dcap-1(tm3163)_downregulated

0 Expression Patterns

1 Followed By

Remark	Definition	Other Name	Public Name	Primary Identifier
	At 20 Centigrade: 10-11 days after L4-adult molt. 13-14 days after first cleavage.		10-days post-L4 adult hermaphrodite Ce	WBls:0000674

1 Preceded By

Remark	Definition	Other Name	Public Name	Primary Identifier
	At 20 Centigrade: 8-9 days after L4-adult molt. 11-12 days after first cleavage.		8-days post-L4 adult hermaphrodite Ce	WBls:0000672

0 Sub Stages