WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 256, pek-1_22220-pek-1_33, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:pek-1_22220-pek-1_33

0 Anatomy Terms

14 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002999 lin-10 C09H6.2 Caenorhabditis elegans
WBGene00003411 mrp-5 F14F4.3 Caenorhabditis elegans
WBGene00003477 mtm-5 H28G03.6 Caenorhabditis elegans
WBGene00003616 nhr-17 C02B4.2 Caenorhabditis elegans
WBGene00003970 pek-1 F46C3.1 Caenorhabditis elegans
WBGene00004317 rbg-1 F20D1.6 Caenorhabditis elegans
WBGene00004746 sdc-2 C35C5.1 Caenorhabditis elegans
WBGene00007047 wts-1 T20F10.1 Caenorhabditis elegans
WBGene00008974 tbc-1 F20D1.2 Caenorhabditis elegans
WBGene00009180 nurf-1 F26H11.2 Caenorhabditis elegans
WBGene00009552 piki-1 F39B1.1 Caenorhabditis elegans
WBGene00012139 T28F4.4 T28F4.4 Caenorhabditis elegans
WBGene00020596 oga-1 T20B5.3 Caenorhabditis elegans
WBGene00008925 F17H10.1 F17H10.1 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule