WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Using the Cufflink package and CuffDiff application from Galaxy, FPKM (Fragments Per Kilobase of transcript per Million mapped reads) were calculated and tested for differential expression with a FDR score of 5%. Description  Transcripts that showed significantly decreased expression in skr-1 and skr-2(RNAi) animals comparing to in control animals.
Primary Identifier  WBPaper00050332:skr-1(RNAi)-skr-2(RNAi)_downregulated
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0 Anatomy Terms

131 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000022 abt-4 Y39D8C.1 Caenorhabditis elegans
WBGene00000107 alh-1 F54D8.3 Caenorhabditis elegans
WBGene00000214 asp-1 Y39B6A.20 Caenorhabditis elegans
WBGene00000220 atf-2 K08F8.2 Caenorhabditis elegans
WBGene00000221 atf-4 T04C10.4 Caenorhabditis elegans
WBGene00000298 cat-4 F32G8.6 Caenorhabditis elegans
WBGene00000650 col-74 ZK1248.2 Caenorhabditis elegans
WBGene00000675 col-101 K02D7.3 Caenorhabditis elegans
WBGene00000708 col-135 M199.5 Caenorhabditis elegans
WBGene00000738 col-165 F14H12.1 Caenorhabditis elegans
WBGene00000752 col-179 C34F6.3 Caenorhabditis elegans
WBGene00000781 cpr-1 C52E4.1 Caenorhabditis elegans
WBGene00000783 cpr-3 T10H4.12 Caenorhabditis elegans
WBGene00000972 dhs-8 K10H10.3 Caenorhabditis elegans
WBGene00001069 dpy-7 F46C8.6 Caenorhabditis elegans
WBGene00001158 ech-9 F01G10.3 Caenorhabditis elegans
WBGene00001395 fat-3 W08D2.4 Caenorhabditis elegans
WBGene00001570 gei-13 F58A4.11 Caenorhabditis elegans
WBGene00001752 gst-4 K08F4.7 Caenorhabditis elegans
WBGene00001761 gst-13 T26C5.1 Caenorhabditis elegans
WBGene00001778 gst-30 ZK546.11 Caenorhabditis elegans
WBGene00001782 gst-34 Y1H11.1 Caenorhabditis elegans
WBGene00002058 ifd-2 F25E2.4 Caenorhabditis elegans
WBGene00002269 lec-6 Y55B1AR.1 Caenorhabditis elegans
WBGene00002273 lec-10 W01A11.4 Caenorhabditis elegans
WBGene00002393 lpr-1 Y65B4BR.2 Caenorhabditis elegans
WBGene00003092 lys-3 Y22F5A.6 Caenorhabditis elegans
WBGene00003093 lys-4 F58B3.1 Caenorhabditis elegans
WBGene00003877 pept-1 K04E7.2 Caenorhabditis elegans
WBGene00003958 pcp-3 F23B2.11 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004807 skr-1 F46A9.5 Caenorhabditis elegans
WBGene00004808 skr-2 F46A9.4 Caenorhabditis elegans

0 Regulated By Molecule