WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For differential gene expression analysis, sets of independent mutant and control mapped reads (e.g biological replicates) were used in cuffdiff analysis. The cutoff of FDR(q value)=0.05 was used as a significance cutoff for all the analyses. Description  Transcripts that showed significantly increased expression in L1 larva comparing to in embryo, in primordial germ cells (PGCs) of N2 animals fed with control bacteria, according to SMARTseq.
Primary Identifier  WBPaper00053321:embryo-to-L1_upregulated_WT_SMARTseq
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1 Anatomy Terms

Definition Name Synonym Primary Identifier
member of a set of two cells that generate exclusively sperm and ovum. germline precursor cell PGC WBbt:0006849

133 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000159 aps-1 F29G9.3 Caenorhabditis elegans
WBGene00000546 clp-6 Y77E11A.10 Caenorhabditis elegans
WBGene00001044 dnj-26 Y39C12A.8 Caenorhabditis elegans
WBGene00001358 evl-20 F22B5.1 Caenorhabditis elegans
WBGene00001606 gln-5 F26D10.10 Caenorhabditis elegans
WBGene00001808 gut-2 T10G3.6 Caenorhabditis elegans
WBGene00001864 him-5 D1086.4 Caenorhabditis elegans
WBGene00002263 lea-1 K08H10.1 Caenorhabditis elegans
WBGene00003083 lst-1 T22A3.3 Caenorhabditis elegans
WBGene00003148 mbf-1 H21P03.1 Caenorhabditis elegans
WBGene00003234 mif-1 Y56A3A.3 Caenorhabditis elegans
WBGene00004297 rad-51 Y43C5A.6 Caenorhabditis elegans
WBGene00004314 rbc-2 Y54F10AM.10 Caenorhabditis elegans
WBGene00004444 rpl-30 Y106G6H.3 Caenorhabditis elegans
WBGene00004960 spe-6 Y66D12A.20 Caenorhabditis elegans
WBGene00006698 uaf-2 Y116A8C.35 Caenorhabditis elegans
WBGene00006775 unc-39 F56A12.1 Caenorhabditis elegans
WBGene00006889 pfd-3 T06G6.9 Caenorhabditis elegans
WBGene00007173 B0393.8 B0393.8 Caenorhabditis elegans
WBGene00007334 C05C10.7 C05C10.7 Caenorhabditis elegans
WBGene00007476 C09E9.1 C09E9.1 Caenorhabditis elegans
WBGene00007574 C14B1.3 C14B1.3 Caenorhabditis elegans
WBGene00007732 spe-44 C25G4.4 Caenorhabditis elegans
WBGene00008402 wdfy-2 D2013.2 Caenorhabditis elegans
WBGene00009139 F25H9.7 F25H9.7 Caenorhabditis elegans
WBGene00009177 F26H9.5 F26H9.5 Caenorhabditis elegans
WBGene00009369 F33H2.6 F33H2.6 Caenorhabditis elegans
WBGene00009702 F44F4.3 F44F4.3 Caenorhabditis elegans
WBGene00010303 cri-3 F59A2.3 Caenorhabditis elegans
WBGene00010409 nse-4 H21P03.2 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003

0 Processes

0 Regulated By Gene

0 Regulated By Molecule